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[emBASE] New functionality for emBASE

Author: Sajoscha - Published At: 27-10-2015 16:08 - (1258 Reads)
  • Changing the QC flag on an sequencing assay does now also change the related RawBioAssay (rba) QC flags. If an assay is flagged failed, all rbas are also flagged failed. If you flag an assay passed, all rbas are flagged passed if they all were NA before.
  • It is now possible to update QC flags for RawBioAssays in batch on the rba list page and the sequencing assay page.
  • The state of an experiment, that says wether the experiment is active or not, is now visible on the experiment list page. Also you can search for experiments with a specific state.
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RStudio Server update

Author: Sajoscha - Published At: 16-09-2015 10:15 - (1691 Reads)

RStudio Server was updated to the latest version (0.99.483) on spinoza and schroedinger. Both servers are running the latest version of R, 3.2.2.

If you encounter any problems or want to have R packages installed globally, please do not hesitate to contact us at gbcs at embl.de or gbcs_request at embl.de

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[SEPP] New tool installations

Author: Sajoscha - Published At: 15-06-2015 14:58 - (1170 Reads)

There are some new tools installed on SEPP by the GBCS. The tools are:

  • Bowtie2 (2.2.5)
  • MACS2 (2.1.0)
  • FastQC (0.11.3)
  • Samtools (1.2)
  • VCFtools (0.1.7)

If you encounter any problems, please do not hesitate to contact us at gbcs at embl.de or gbcs_request at embl.de

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[GALAXY] New tools

Author: Jelle - Published At: 07-05-2015 16:44 - (1487 Reads)

In the last weeks/months, we have installed and updated a bunch of Galaxy tools:

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