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In addition to starting RStudio within Galaxy, you can now also use the GalaxyConnector package to directly connect from your R/RStudio session at Spinoza or Schroedinger to any Galaxy instance. Please follow the 'End User' steps from this README: https://github.com/scholtalbers/r-galaxy-connector |
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In the last weeks/months, we have installed and updated a bunch of Galaxy tools: |
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The presentation, available in the Galaxy Tutorials, is a intro into galaxy and uses ChIP-seq as an analysis example. |
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Galaxy allows you to use your own reference genomes, helpful if your reference is not standard or just not yet available in our Galaxy instance. You can follow the guide Add Custom Genomes to add your own! |
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GBCS releases 3 workflows dedicated to ChIP-seq data analysis |