emBASE Tutorials

On this page you can find tutorials and information about emBASE functionalities and modules.

Presentations and Demos


Tutorials / How-to

Transfer Data to EBI Arrayexpress

Time to submit data to EBI? You first need to create the MAGE-TAB document. Here is then how you transfer files to EBI by FTP

Import Analysis Results in emBASE

A new plug-in in emBASE is available. It allows you to store your result data for NGS experiments. An in-depth explanation can be found here

With that plug-in, you can also upload a full analysis report folder as described here

NGS Data Management

Biomaterial (samples, protocols ...)

Experiments / Projects and Archiving Data to Tape

In Situ Images Module 

  • In situ storage: Storage and visualization of in situ assays
  • Batch create ISH assays : this describes how you can prepare a spreadsheet to create multiple ISH assays in one click.

Microarray module


User Manuals



  • Naming convention in emBASE : Get File
  • MIAME Unit Symbol Table : Get File
  • Guidelines on how to build a GAL file : Get File

Scripts/Helpers emBASE admins only